[INFO] cloning repository https://github.com/dgutierrezcastillo/rust_annotale
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/dgutierrezcastillo/rust_annotale" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdgutierrezcastillo%2Frust_annotale", kill_on_drop: false }`
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[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 3b6083fdf70ad4feade274c8954ac02cfc27e661
[INFO] testing dgutierrezcastillo/rust_annotale against master#cced03bfd61a304243a34504618ecec86c17063f for pr-154065-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdgutierrezcastillo%2Frust_annotale" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
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[INFO] started tweaking git repo https://github.com/dgutierrezcastillo/rust_annotale
[INFO] finished tweaking git repo https://github.com/dgutierrezcastillo/rust_annotale
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[INFO] validating manifest of git repo https://github.com/dgutierrezcastillo/rust_annotale on toolchain cced03bfd61a304243a34504618ecec86c17063f
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
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[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling rand v0.8.6
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling genomic-system-finder-hmm v0.1.2
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling nalgebra v0.33.3
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling rust_annotale v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Context`
[INFO] [stdout]  --> src/bin/repdiff.rs:1:14
[INFO] [stdout]   |
[INFO] [stdout] 1 | use anyhow::{Context, Result};
[INFO] [stdout]   |              ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Context`
[INFO] [stdout]  --> src/bin/analyze.rs:1:14
[INFO] [stdout]   |
[INFO] [stdout] 1 | use anyhow::{Context, Result};
[INFO] [stdout]   |              ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `cds_start` and `cds_end` are never read
[INFO] [stdout]   --> src/main.rs:85:5
[INFO] [stdout]    |
[INFO] [stdout] 80 | struct TALERegion {
[INFO] [stdout]    |        ---------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 85 |     cds_start: usize, 
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout] 86 |     cds_end: usize,   
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `TALERegion` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `threshold` is never read
[INFO] [stdout]   --> src/main.rs:95:5
[INFO] [stdout]    |
[INFO] [stdout] 91 | struct TALEFinder {
[INFO] [stdout]    |        ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 95 |     threshold: f32,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 46.10s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "dc5119352be00c0429af1a5dab71075bbd57d2a269f1379c88e7ff131c43344a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "dc5119352be00c0429af1a5dab71075bbd57d2a269f1379c88e7ff131c43344a", kill_on_drop: false }`
[INFO] [stdout] dc5119352be00c0429af1a5dab71075bbd57d2a269f1379c88e7ff131c43344a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 69410801e16b4b1de77ab8bdf311302d0e5b3dfa6a98e2ebe20b8ce791182ea8
[INFO] running `Command { std: "docker" "start" "-a" "69410801e16b4b1de77ab8bdf311302d0e5b3dfa6a98e2ebe20b8ce791182ea8", kill_on_drop: false }`
[INFO] [stderr]    Compiling rust_annotale v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Context`
[INFO] [stdout]  --> src/bin/analyze.rs:1:14
[INFO] [stdout]   |
[INFO] [stdout] 1 | use anyhow::{Context, Result};
[INFO] [stdout]   |              ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Context`
[INFO] [stdout]  --> src/bin/repdiff.rs:1:14
[INFO] [stdout]   |
[INFO] [stdout] 1 | use anyhow::{Context, Result};
[INFO] [stdout]   |              ^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `cds_start` and `cds_end` are never read
[INFO] [stdout]   --> src/main.rs:85:5
[INFO] [stdout]    |
[INFO] [stdout] 80 | struct TALERegion {
[INFO] [stdout]    |        ---------- fields in this struct
[INFO] [stdout] ...
[INFO] [stdout] 85 |     cds_start: usize, 
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout] 86 |     cds_end: usize,   
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `TALERegion` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `threshold` is never read
[INFO] [stdout]   --> src/main.rs:95:5
[INFO] [stdout]    |
[INFO] [stdout] 91 | struct TALEFinder {
[INFO] [stdout]    |        ---------- field in this struct
[INFO] [stdout] ...
[INFO] [stdout] 95 |     threshold: f32,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.46s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "69410801e16b4b1de77ab8bdf311302d0e5b3dfa6a98e2ebe20b8ce791182ea8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "69410801e16b4b1de77ab8bdf311302d0e5b3dfa6a98e2ebe20b8ce791182ea8", kill_on_drop: false }`
[INFO] [stdout] 69410801e16b4b1de77ab8bdf311302d0e5b3dfa6a98e2ebe20b8ce791182ea8
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+cced03bfd61a304243a34504618ecec86c17063f" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c2db7dabbf672989af219ef365c43de77e846b9f7b6924a7d8e8fc7fbac74204
[INFO] running `Command { std: "docker" "start" "-a" "c2db7dabbf672989af219ef365c43de77e846b9f7b6924a7d8e8fc7fbac74204", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `Context`
[INFO] [stderr]  --> src/bin/analyze.rs:1:14
[INFO] [stderr]   |
[INFO] [stderr] 1 | use anyhow::{Context, Result};
[INFO] [stderr]   |              ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `Context`
[INFO] [stderr]  --> src/bin/repdiff.rs:1:14
[INFO] [stderr]   |
[INFO] [stderr] 1 | use anyhow::{Context, Result};
[INFO] [stderr]   |              ^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: fields `cds_start` and `cds_end` are never read
[INFO] [stderr]   --> src/main.rs:85:5
[INFO] [stderr]    |
[INFO] [stderr] 80 | struct TALERegion {
[INFO] [stderr]    |        ---------- fields in this struct
[INFO] [stderr] ...
[INFO] [stderr] 85 |     cds_start: usize, 
[INFO] [stderr]    |     ^^^^^^^^^
[INFO] [stderr] 86 |     cds_end: usize,   
[INFO] [stderr]    |     ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `TALERegion` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: field `threshold` is never read
[INFO] [stderr]   --> src/main.rs:95:5
[INFO] [stderr]    |
[INFO] [stderr] 91 | struct TALEFinder {
[INFO] [stderr]    |        ---------- field in this struct
[INFO] [stderr] ...
[INFO] [stderr] 95 |     threshold: f32,
[INFO] [stderr]    |     ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `rust_annotale` (bin "analyze" test) generated 1 warning (run `cargo fix --bin "analyze" -p rust_annotale --tests` to apply 1 suggestion)
[INFO] [stderr] warning: `rust_annotale` (bin "repdiff" test) generated 1 warning (run `cargo fix --bin "repdiff" -p rust_annotale --tests` to apply 1 suggestion)
[INFO] [stderr] warning: `rust_annotale` (bin "rust_annotale" test) generated 2 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/bin/analyze.rs (/opt/rustwide/target/debug/deps/analyze-3281f18b57d0d66b)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/build_families.rs (/opt/rustwide/target/debug/deps/build_families-16cb8067b587d3dc)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/filter_reads.rs (/opt/rustwide/target/debug/deps/filter_reads-019a5373e91c6680)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/frameshifts.rs (/opt/rustwide/target/debug/deps/frameshifts-0f3d59c6d6d7668b)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/rename.rs (/opt/rustwide/target/debug/deps/rename-e7ab3687a0131854)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/repdiff.rs (/opt/rustwide/target/debug/deps/repdiff-958f52ba1d452148)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/rust_annotale-c38e9f3f0a2d139b)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c2db7dabbf672989af219ef365c43de77e846b9f7b6924a7d8e8fc7fbac74204", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c2db7dabbf672989af219ef365c43de77e846b9f7b6924a7d8e8fc7fbac74204", kill_on_drop: false }`
[INFO] [stdout] c2db7dabbf672989af219ef365c43de77e846b9f7b6924a7d8e8fc7fbac74204
